rs3745648 chr19:12832824 G>C
- Sequence
ccccgtcgtccagcaggggtcgct[G/C]ttacccagcgaccgcgccctccgg
- ASB in cell types
- HEK293 (embryonic kidney) D54 (H54, Human glioblastoma) HBMEC (human brain microvascular endothelial cells) TF-1 (erythroleukemia)
- ASB for transcription factors
- CTCF_HUMAN GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.72 | 1.23 | 1.24 | -0.40 | Weak Discordant | |||
| GLIS1_HUMAN | -1.62 | 2.55 | 2.00 | -0.22 | Weak Discordant |
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Motif analysis
