rs3745656 chr19:12441132 C>G
- Sequence
cagttcccacgaacccgccccacg[C/G]ccctgattggatagggcgtcaggt
- ASB in cell types
- SK-N-SH (neuroblastoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MOLT-4 (Adult T acute lymphoblastic leukemia) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- JUN_HUMAN GABPA_HUMAN CDN1B_HUMAN PBX3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.41 | 1.74 | 2.12 | n/a | No Hit | |||
| GABPA_HUMAN | 1.57 | -0.28 | 1.31 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.96 | 2.10 | 2.33 | n/a | n/a | |||
| PBX3_HUMAN | 1.59 | -1.35 | 1.00 | n/a | No Hit | |||
| SPT5H_HUMAN | 1.21 | -0.27 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood