rs3745716 chr19:48203930 C>G
- Sequence
tcccagccggctgagcgccaccag[C/G]gctttcgcgtccaagtccctttgc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) CTV-1 (Adult T acute lymphoblastic leukemia) HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- RBM25_HUMAN ETS1_HUMAN TYY1_HUMAN GLIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | -0.72 | 2.06 | 2.00 | n/a | n/a | |||
| ETS1_HUMAN | 2.15 | -0.54 | 1.17 | n/a | No Hit | |||
| TYY1_HUMAN | 1.02 | 2.81 | 1.50 | n/a | No Hit | |||
| GLIS2_HUMAN | -2.34 | 2.45 | 1.00 | n/a | No Hit | |||
| MAF_HUMAN | 2.34 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood