rs3745779 chr19:36573130 T>C
- Sequence
acaccacaatgacgtcgtaaacaa[T/C]agcactaaccaccatcgtccgcag
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) primary B-CLL cells monocytes from periferal blood
- ASB for transcription factors
- BRD4_HUMAN SRBP2_HUMAN ESR1_HUMAN ZN143_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 3.33 | -0.19 | 2.00 | n/a | n/a | |||
| SRBP2_HUMAN | 2.39 | n/a | 3.00 | n/a | No Hit | |||
| ESR1_HUMAN | 0.27 | 0.98 | 2.12 | n/a | No Hit | |||
| ZN143_HUMAN | 0.43 | 2.36 | 1.88 | 2.74 | Concordant | |||
| STAG1_HUMAN | 0.03 | 1.23 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid