rs3745967 chr19:33374012 C>G

Sequence
acccagccccggccccagacggcc[C/G]gctggcccgggaaggccacgcgag
ASB in cell types
HepG2 (hepatoblastoma) Kelly (neuroblastoma)
ASB for transcription factors
RBM25_HUMAN TYY1_HUMAN MYCN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN n/a 2.59 1.001.6·10-3 3.00 n/a n/a
TYY1_HUMAN n/a 2.68 1.000.03 3.00 n/a No Hit
MYCN_HUMAN -0.01 1.65 0.910.04 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hippocampus,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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