rs3746165 chr19:1102212 A>G
- Sequence
tcagaaaaggttaagaccttgagg[A/G]caacatacaaatcccaagcaccta
- ASB in cell types
- GM19099 (female B-cells Lymphoblastoid Cell Lines) HEK293 (embryonic kidney) GM02255 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.07 | 2.07 | 1.84 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, n-acetyl-p-benzoquinonimine (napqi) ic50 values, serum creatinine, triglycerides
GTEx eQTL Adrenal_Gland, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Thyroid, Whole_Blood