rs3746259 chr19:19134962 A>G

Sequence
cctccctccctaggaacccaggct[A/G]tttatagagaagtcaggctggatg
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.35 -0.28 0.030.95 1.06 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  childhood acute lymphoblastic leukemia,  hdl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Thyroid

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