rs3746342 chr20:63658235 C>A

Sequence
aacgccgtgtaggcctggaggagc[C/A]gaagagcaggcggaccccctccgc
ASB in cell types
K562 (myelogenous leukemia) primary B-CLL cells 22RV1 (prostate carcinoma)
ASB for transcription factors
ZBT11_HUMAN GABP1_HUMAN VEZF1_HUMAN HCFC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT11_HUMAN n/a 2.86 1.001.6·10-4 2.00 n/a n/a
GABP1_HUMAN n/a 0.34 1.003.5·10-4 2.00 n/a n/a
VEZF1_HUMAN -1.75 2.72 1.008.0·10-4 2.00 0.91 Weak Concordant
HCFC1_HUMAN -5.49 3.16 1.003.5·10-3 2.00 n/a n/a
BRD4_HUMAN 2.24 0.70 0.020.80 1.67 n/a n/a
Items per page:
1 – 5 of 6

Motif analysis

VEZF1_HUMAN Weak Concordant
VEZF1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Esophagus_Mucosa,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid,  Whole_Blood

Download