rs3746459 chr20:33667427 T>C
- Sequence
ccgtgctggtgagcgactcgccgt[T/C]ggcgccgcccgcgggccgcgaaag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MS-1 (Small cell lung carcinoma) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- PAX2_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PAX2_HUMAN | -5.49 | 3.22 | 2.00 | n/a | No Hit | |||
| ZFX_HUMAN | -0.84 | 1.96 | 1.30 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid