rs3746599 chr20:31849719 A>G
- Sequence
cctgcaacacgtgggcgctgggca[A/G]tgggtcggggaagcgaacctgctg
- ASB in cell types
- NCI-H2171 (small cell lung carcinoma) MKL-1 (Merkel cell carcinoma)
- ASB for transcription factors
- MAX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 2.23 | -0.39 | 1.57 | 0.69 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP alzheimers disease, arthritis including non-rheumatoid, asthma, bipolar disorder, diastolic blood pressure (dbp), eye color, fasting insulin, homa-b, homa-ir, infant head circumference, longstanding arthritis, rheumatoid arthritis, sporadic amyotrophic lateral sclerosis (als) survival
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood