rs3747093 chr22:21630090 G>A
- Sequence
aggccccgcccccggacgctgccc[G/A]ggccccgccccgacgcacacgccc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) THP-1 (acute monocytic leukemia) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN CENPA_HUMAN ANDR_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.84 | -1.12 | 1.33 | n/a | No Hit | |||
| CENPA_HUMAN | n/a | 2.70 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.12 | -1.15 | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | 1.97 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood