rs3747571 chr16:4273982 A>G
- Sequence
tgtgggacttgcccctccgccagg[A/G]tgcgctccccaagagggggtgacg
- ASB in cell types
- bipolar neuron GM12892 (female B-cells lymphoblastoid cell line) pancreas adrenal gland
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ELL2_HUMAN GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.01 | 2.34 | 1.64 | 3.22 | Concordant | |||
| RAD21_HUMAN | -0.38 | 2.82 | 1.50 | n/a | n/a | |||
| ELL2_HUMAN | -0.13 | 2.22 | 1.83 | n/a | n/a | |||
| GLIS1_HUMAN | 2.52 | -4.52 | 1.50 | 0.95 | Weak Discordant | |||
| SMAD3_HUMAN | 2.56 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
