rs3748753 chr1:19374521 G>A
- Sequence
ttccaacccccaaccaccaggggc[G/A]caggccaagctctagcttgaagtg
- ASB in cell types
- RWPE2 MS-1 (Small cell lung carcinoma) GM10847 (female B-cells Lymphoblastoid Cell Lines) RWPE1 (prostate epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.36 | -0.26 | 1.58 | 1.09 | Weak Discordant | |||
| STAG1_HUMAN | 2.58 | -0.01 | 2.33 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Hypothalamus, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Spleen, Stomach, Testis, Thyroid, Whole_Blood