rs3748979 chr16:12803538 C>A

Sequence
tctcggcctcgcctctcaactgcg[C/A]ccctggaatccctaagagcaggct
ASB in cell types
HepG2 (hepatoblastoma) CD14+ monocytes pancreas
ASB for transcription factors
STAT1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.52 0.08 5.7·10-41.00 2.00 n/a No Hit
CTCF_HUMAN 1.08 0.30 5.6·10-31.00 1.20 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration,  diastolic blood pressure (dbp),  triglycerides
GTEx eQTL Artery_Tibial,  Colon_Sigmoid,  Colon_Transverse,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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