rs3749138 chr2:677213 G>A

Sequence
ccggggccttcttggccacaggcc[G/A]ggtgctctgtggggcctaccctac
ASB in cell types
22RV1 (prostate carcinoma) MOLT-4 (Adult T acute lymphoblastic leukemia) HepG2 (hepatoblastoma) primary B-CLL cells
ASB for transcription factors
REST_HUMAN TYY1_HUMAN CRTC2_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
REST_HUMAN -0.03 2.83 1.002.6·10-6 1.00 n/a No Hit
TYY1_HUMAN n/a 3.22 1.001.4·10-5 2.00 n/a No Hit
CRTC2_HUMAN 2.61 -2.15 6.0·10-51.00 1.00 n/a n/a
ANDR_HUMAN -0.44 3.30 1.007.0·10-5 2.00 n/a No Hit
SPT5H_HUMAN 1.02 -0.41 5.2·10-31.00 1.00 n/a n/a
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Motif analysis

NFIA_HUMAN Concordant
NFIA_HUMAN pic

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Muscle_Skeletal,  Pituitary,  Spleen,  Thyroid

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