rs3749282 chr3:146065653 T>C

Sequence
cctttgggaaaaaatttgatagca[T/C]gattttataaagctcttgcatttg
ASB in cell types
foreskin keratinocyte A549 (lung carcinoma) PC9 (lung adenocarcinoma)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
foreskin keratinocyte 0.96 n/a 2.0·10-61.00 2.33
A549 (lung carcinoma) 0.41 1.36 0.895.3·10-5 2.00
PC9 (lung adenocarcinoma) 1.08 0.46 0.021.00 2.00
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Motif analysis

No data available

Genetic associations

GRASP systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Spleen,  Testis,  Thyroid,  Uterus

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