rs3749882 chr6:169751670 C>T
- Sequence
gcaccggaagttatggaggtaggg[C/T]gggtgtagggcccggttcgatccc
- ASB in cell types
- keratinocytes CD14+ monocytes 22RV1 (prostate carcinoma) primary B-CLL cells
- ASB for transcription factors
- SNAI2_HUMAN STAT1_HUMAN ANDR_HUMAN FLI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 3.13 | 1.50 | -3.66 | Discordant | |||
| STAT1_HUMAN | 3.03 | -4.05 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.21 | 0.12 | 1.67 | n/a | No Hit | |||
| FLI1_HUMAN | 2.63 | 0.87 | 2.40 | n/a | No Hit | |||
| BRD4_HUMAN | 2.41 | 0.36 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood