rs3750525 chr9:113376980 C>A
- Sequence
agccgcaaggcccgcgagctcggg[C/A]ggaggtgcgcaagcgccgggcggt
- ASB in cell types
- LNCaP (prostate carcinoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- TBP_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 0.06 | 1.58 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.24 | 0.17 | 1.14 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Uterus, Whole_Blood