rs3750558 chr10:97498466 T>G
- Sequence
gcgcatgcgcctcccgagccaatc[T/G]ccggggaagcgcaagggggcgggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) monocytes from periferal blood CD14+ monocytes CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SRBP2_HUMAN FOXK2_HUMAN STAT1_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 1.65 | -1.26 | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | n/a | 2.59 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.31 | -0.20 | 3.00 | n/a | No Hit | |||
| TYY1_HUMAN | 0.34 | 1.46 | 1.40 | n/a | No Hit | |||
| HTF4_HUMAN | -2.13 | 2.27 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood