rs3750580 chr10:132836936 T>C
- Sequence
agcctgtgtggcgaaaaacggcca[T/C]caggggatgcatttaggacgcaag
- ASB in cell types
- A549 (lung carcinoma) upper lobe of left lung neural cell GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.62 | 1.01 | 1.36 | 4.28 | Concordant | |||
| RAD21_HUMAN | 0.09 | 0.80 | 1.64 | n/a | n/a |
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Motif analysis
