rs3751129 chr12:102061951 G>A
- Sequence
gcctgaccccatgagaggaagccc[G/A]tcctcatccatctcctcagcgggc
- ASB in cell types
- breast tumor 22RV1 (prostate carcinoma) adult erythroblasts primary human Th1 T cells
- ASB for transcription factors
- RBBP5_HUMAN ETS1_HUMAN ANDR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.86 | n/a | 2.00 | n/a | n/a | |||
| ETS1_HUMAN | 2.23 | 0.86 | 1.17 | n/a | No Hit | |||
| ANDR_HUMAN | 2.57 | 0.09 | 1.83 | n/a | No Hit | |||
| ESR1_HUMAN | 2.59 | n/a | 1.67 | n/a | No Hit | |||
| STAT3_HUMAN | 2.36 | -2.38 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood