rs375125 chr20:47895553 T>G
- Sequence
ttctagtttcagggtcgtggagct[T/G]ctgacccagggaggagcattgttg
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- HCFC1_HUMAN JUN_HUMAN ZN592_HUMAN NCOA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 2.35 | -2.97 | 6.00 | n/a | n/a | |||
| JUN_HUMAN | 2.60 | -2.93 | 6.00 | n/a | No Hit | |||
| ZN592_HUMAN | 2.35 | -3.34 | 6.00 | n/a | n/a | |||
| NCOA3_HUMAN | 2.15 | -3.17 | 4.50 | n/a | n/a | |||
| ELF1_HUMAN | -2.88 | 2.07 | 6.00 | n/a | No Hit |
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Motif analysis
