rs3751884 chr16:1474849 A>G

Sequence
cggcctcacctggcgcgcagcccc[A/G]ggcccagccccgttcagcagcggc
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney)
ASB for transcription factors
CTBP1_HUMAN RFOX2_HUMAN CTCF_HUMAN ZBT26_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTBP1_HUMAN n/a 3.04 1.006.9·10-3 2.00 n/a n/a
RFOX2_HUMAN -0.80 1.90 1.000.03 2.00 n/a n/a
CTCF_HUMAN 0.01 1.20 1.000.04 1.38 n/a No Hit
ZBT26_HUMAN 2.30 -4.25 0.041.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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