rs3752099 chr18:21600250 G>A
- Sequence
cgggaccagcactggcgctgcccc[G/A]gtgctagcaatggctgcgcgccac
- ASB in cell types
- keratinocytes HepG2 (hepatoblastoma) HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TYY1_HUMAN SNAI2_HUMAN CTCF_HUMAN CHD8_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.51 | -0.83 | 1.85 | n/a | No Hit | |||
| SNAI2_HUMAN | n/a | 3.33 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.95 | 0.60 | 1.18 | n/a | No Hit | |||
| CHD8_HUMAN | 2.70 | -2.57 | 1.00 | n/a | n/a | |||
| MAZ_HUMAN | 2.99 | -5.21 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid