rs3752259 chr20:46406815 C>T
- Sequence
gaggcctcttaaagaaacaggacg[C/T]cattcccctgcgggctacagggtc
- ASB in cell types
- HEK293 (embryonic kidney) MDM(monocyte derived macrophages) 22RV1 (prostate carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- TF65_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 3.07 | n/a | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.80 | -0.81 | 2.00 | 3.95 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Esophagus_Muscularis