rs3752418 chr6:26045509 C>G
- Sequence
agcccgtaagagcgctccggccac[C/G]ggtggcgtgaagaaacctcatcgc
- ASB in cell types
- HepG2 (hepatoblastoma) SUM159PT (Triple negative breast cancer) GM12878 (female B-cells lymphoblastoid cell line) hTERT-HME1(Telomerase immortalized cell line)
- ASB for transcription factors
- SMAD3_HUMAN FOXK2_HUMAN BRCA2_HUMAN RFOX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD3_HUMAN | 2.65 | -1.84 | 1.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.66 | -5.04 | 1.75 | n/a | No Hit | |||
| BRCA2_HUMAN | -0.81 | 1.82 | 1.00 | n/a | n/a | |||
| RFOX2_HUMAN | 1.23 | -3.66 | 2.00 | n/a | n/a |
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