rs3752561 chr20:43591140 G>T
- Sequence
ggactcgccgcactcttcgaggcc[G/T]ctgggccggtcatagaacatccag
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) HCC-1599(ductal breast carcinoma) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- SUH_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SUH_HUMAN | 2.04 | -0.88 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.15 | 1.10 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Cerebellum, Cells_EBV-transformed_lymphocytes, Esophagus_Muscularis, Nerve_Tibial, Pituitary, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood