rs3752573 chr6:122471620 G>C
- Sequence
ggtggggcaccacattcccgccgg[G/C]ctcacccagccccggctcggatcg
- ASB in cell types
- primary B-CLL cells 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- BRD4_HUMAN ELF1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.90 | 0.35 | 1.67 | n/a | n/a | |||
| ELF1_HUMAN | -1.83 | 2.22 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.73 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood