rs375259 chr4:48341533 C>T
- Sequence
atattggcgccgcctcccccaatc[C/T]cggagccggcgcagatgaggcagt
- ASB in cell types
- K562 (myelogenous leukemia) monocytes from periferal blood thymus-derived CD34+ cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BC11B_HUMAN SRBP2_HUMAN ANDR_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | 1.88 | n/a | 2.25 | n/a | n/a | |||
| SRBP2_HUMAN | 2.24 | -0.87 | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.30 | 0.32 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.69 | 1.13 | 1.28 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Testis