rs3752692 chr15:80173578 G>A
- Sequence
gagtccctgcagcctctggttccc[G/A]gcaccgcttggtctaccactgggt
- ASB in cell types
- A549 (lung carcinoma) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 0.93 | 1.38 | 1.13 | n/a | n/a | |||
| RAD21_HUMAN | 0.33 | 0.76 | 1.34 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, birth weight, body mass index (bmi) (within family tests max measurement), fasting insulin, homa-ir, salmonella-induced pyroptosis, years of education
GTEx eQTL Adipose_Subcutaneous, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Thyroid, Uterus