rs3752848 chr6:117602436 T>C
- Sequence
gcgccgttaacgccagcagcacag[T/C]cacagaaccgcaggagtaacgagg
- ASB in cell types
- K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium) primary B-CLL cells CD34+ hematopoietic stem cells
- ASB for transcription factors
- GCR_HUMAN TYY1_HUMAN NELFE_HUMAN NRF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.43 | 0.34 | 1.00 | n/a | No Hit | |||
| TYY1_HUMAN | 1.22 | 1.13 | 1.73 | n/a | No Hit | |||
| NELFE_HUMAN | 1.52 | -4.15 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | 1.05 | -0.16 | 1.81 | n/a | No Hit | |||
| BRD4_HUMAN | 1.17 | -0.09 | 2.08 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood