rs3753025 chr9:104748160 C>G
- Sequence
acactcccatggcgccggctgttt[C/G]gtttttgctgcccagctatgtcgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes HCASMC (Human coronary artery smooth muscle cells) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- FOXK2_HUMAN STAT1_HUMAN TCF21_HUMAN INT11_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.17 | -0.66 | 1.25 | n/a | No Hit | |||
| STAT1_HUMAN | 3.08 | -5.59 | 2.00 | -2.66 | Concordant | |||
| TCF21_HUMAN | 2.90 | n/a | 2.00 | -1.44 | Weak Concordant | |||
| INT11_HUMAN | -0.21 | 1.60 | 2.00 | n/a | n/a |
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Motif analysis
