rs3753523 chr1:209651481 G>A
- Sequence
tggaggcaaaccttctcctgtcac[G/A]ggcatggcctccaataccattcag
- ASB in cell types
- CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line) SK-BR-3 (breast adenocarcinoma) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- STAT1_HUMAN FOXA1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.50 | -4.79 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | n/a | 2.93 | 4.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.04 | 1.64 | 1.00 | n/a | n/a |
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