rs3753558 chr1:175193171 A>G
- Sequence
tgtccttgccccctcagtcccgga[A/G]cacgcctccttcaggacacagcgg
- ASB in cell types
- 22RV1 (prostate carcinoma) HeLa S3 (cervical adenocarcinoma) HeLa (cervical adenocarcinoma) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.26 | 1.12 | 1.41 | 1.07 | Weak Concordant | |||
| ANDR_HUMAN | 3.25 | 1.07 | 2.00 | -6.91 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial