rs3753559 chr1:175193132 C>T

Sequence
ccgccggtggctccccactccccg[C/T]cccccgccattacgtgtccttgcc
ASB in cell types
HEK293 (embryonic kidney) GM12890 (Lymphoblastoid Cell Lines)
ASB for transcription factors
ZN335_HUMAN ZN398_HUMAN ZN189_HUMAN ZBT26_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN335_HUMAN n/a 1.83 1.009.1·10-3 2.00 n/a No Hit
ZN398_HUMAN n/a 2.13 1.000.01 2.00 n/a n/a
ZN189_HUMAN -5.04 2.96 1.000.01 2.00 2.26 Concordant
ZBT26_HUMAN n/a 1.55 1.000.01 2.00 n/a No Hit
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Motif analysis

ZN189_HUMAN Concordant
ZN189_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Whole_Blood

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