rs3753560 chr1:175193060 C>G
- Sequence
tgggccagcccacctcgggtgcct[C/G]tggccttgggcgcacacgccccag
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) breast tumor primary human epidermal keratinocytes
- ASB for transcription factors
- ZN335_HUMAN ZBT20_HUMAN ZBT11_HUMAN SP5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN335_HUMAN | n/a | 2.78 | 2.00 | 4.39 | Concordant | |||
| ZBT20_HUMAN | -1.83 | 2.78 | 2.00 | n/a | No Hit | |||
| ZBT11_HUMAN | n/a | 2.62 | 2.00 | n/a | n/a | |||
| SP5_HUMAN | 1.95 | -1.42 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Whole_Blood