rs3754293 chr1:156054582 A>G
- Sequence
ttcctttctccccgaaggggttaa[A/G]tgtccttccagcgctgctgctgtc
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM01310 ( Transformed lymphovlasoid cell line ) HepG2 (hepatoblastoma)
- ASB for transcription factors
- AHR_HUMAN SP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AHR_HUMAN | -1.24 | 2.11 | 1.00 | n/a | No Hit | |||
| SP2_HUMAN | -2.21 | 3.00 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood