rs3754724 chr2:237703764 A>G

Sequence
ccctggagactgggcacccaaacc[A/G]catttcagaaatccctcccactgt
ASB in cell types
OCI-LY7 (diffuse large B-cell lymphoma) HKC8 (kidney proximal tubule cell line)
ASB for transcription factors
FOXP1_HUMAN E2F8_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXP1_HUMAN 2.51 -2.35 0.011.00 1.00 n/a No Hit
E2F8_HUMAN 2.62 -4.84 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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