rs3755726 chr3:195543672 C>A
- Sequence
ggtatctcctctttccatttcgcc[C/A]gtgtaaacagccgaactgcctatt
- ASB in cell types
- T47D (invasive ductal carcinoma) GM12878 (female B-cells lymphoblastoid cell line) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- FOXA1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.22 | 1.93 | 2.47 | 3.66 | Concordant | |||
| FOXK2_HUMAN | -1.96 | 2.42 | 1.50 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood