rs3756585 chr5:181244029 A>C
- Sequence
tgcaaaaggcagagggaaattgca[A/C]ggcatcacagtcccgtcttccgta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXK2_HUMAN HCFC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.60 | -1.09 | 1.50 | n/a | No Hit | |||
| HCFC1_HUMAN | 1.02 | n/a | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood