rs3756614 chr5:179796644 A>G
- Sequence
cgtgagagtggctgcgaaggaacg[A/G]gccctccccctggggcgggactgg
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293T (embryonic kidney) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN ELF1_HUMAN AGO2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 1.00 | 1.23 | -0.34 | Weak Discordant | |||
| ZFX_HUMAN | 0.76 | 1.57 | 1.82 | n/a | No Hit | |||
| ELF1_HUMAN | -1.26 | 1.73 | 2.00 | n/a | No Hit | |||
| AGO2_HUMAN | -0.39 | 1.59 | 1.17 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid