rs3756661 chr5:33440704 T>G
- Sequence
gtgtccgggaaggtccatgattgt[T/G]ccacataaagtcagaagggaggaa
- ASB in cell types
- CD4+ T-cells CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ARNT_HUMAN CTCF_HUMAN STAT1_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | -2.69 | 3.00 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.58 | 1.14 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.45 | 1.08 | 1.80 | n/a | No Hit | |||
| TBX21_HUMAN | -2.10 | 2.08 | 1.00 | n/a | No Hit |
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