rs3756662 chr5:33440518 C>T
- Sequence
ccactacagacagggagcctgagg[C/T]ctgggtggtgccgacaagtcggca
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) neural cell
- ASB for transcription factors
- TYY1_HUMAN ANDR_HUMAN CDN1B_HUMAN HDAC2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.04 | -0.38 | 1.56 | n/a | No Hit | |||
| ANDR_HUMAN | 2.87 | -0.13 | 1.58 | n/a | No Hit | |||
| CDN1B_HUMAN | 1.37 | -0.17 | 1.86 | n/a | n/a | |||
| HDAC2_HUMAN | 0.28 | 1.59 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Vagina, Whole_Blood