rs3756712 chr5:308981 A>C
- Sequence
gcacgtgccgtttaggttgctgta[A/C]acagccggtgagattctcccctct
- ASB in cell types
- Ishikawa (endometrial adenocarcinoma) thyroid gland PANC1 (pancreatic ductal adenocarcinoma) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- USF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | n/a | 2.58 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, eye color, hdl cholesterol, height, ldl cholesterol, lung cancer (squamous cell carcinoma), stabilized warfarin dose, tetrology of fallot, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Uterus, Whole_Blood