rs3756969 chr6:132813798 G>A

Sequence
tagtgaaagcggccgggggcggcg[G/A]gtcacgcctctaatcccagcattt
ASB in cell types
K562 (myelogenous leukemia) MOLM14 (Adult acute myeloid leukemia) CD14+ monocytes
ASB for transcription factors
STAT1_HUMAN RFOX2_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 1.69 0.02 0.031.00 2.00 n/a No Hit
RFOX2_HUMAN 1.75 -0.96 0.041.00 2.00 n/a n/a
ANDR_HUMAN 2.10 -0.13 0.051.00 1.60 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Brain_Cerebellar_Hemisphere,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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