rs3757100 chr6:8435650 C>T

Sequence
cgcgcatgctctatggggtagaga[C/T]gctaggccggcactgcctaggtgg
ASB in cell types
HepG2 (hepatoblastoma) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
ASB for transcription factors
RFOX2_HUMAN BRD4_HUMAN JUN_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFOX2_HUMAN 3.01 n/a 1.3·10-41.00 3.00 n/a n/a
BRD4_HUMAN 1.27 -0.10 5.9·10-41.00 1.71 n/a n/a
JUN_HUMAN 1.28 -0.43 9.0·10-41.00 1.00 n/a No Hit
ANDR_HUMAN 2.60 -1.82 1.7·10-31.00 2.00 n/a No Hit
FOXK2_HUMAN 2.92 n/a 2.9·10-31.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  height,  obesity with early age of onset (age >2),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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