rs3757271 chr6:43635731 C>T

Sequence
aaggaggaacgcagggttcaaatc[C/T]cagctccacttaacctcccccaca
ASB in cell types
K562 (myelogenous leukemia) breast tumor
ASB for transcription factors
ESR1_HUMAN MGAP_HUMAN NELFE_HUMAN ZN592_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.78 -5.01 2.5·10-31.00 2.00 n/a No Hit
MGAP_HUMAN 1.87 n/a 5.7·10-31.00 3.00 n/a No Hit
NELFE_HUMAN 2.41 -1.05 0.011.00 3.00 n/a n/a
ZN592_HUMAN 2.22 n/a 0.011.00 3.00 n/a n/a
NELFA_HUMAN 1.38 n/a 0.021.00 3.00 n/a n/a
Items per page:
1 – 5 of 8

Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  diabetic retinopathy in type 2 diabetes mellitus,  fasting blood glucose,  years of education
GTEx eQTL Artery_Aorta,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Testis

Download