rs3757593 chr7:76049417 G>A

Sequence
gctgggtgctgcaggggataccaa[G/A]ataagtgagaagtgacacttgata
ASB in cell types
K562 (myelogenous leukemia) embryonic stem cells derived definitive endoderm
ASB for transcription factors
ARI1B_HUMAN ZEB2_HUMAN HTF4_HUMAN MTG8R_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARI1B_HUMAN 2.89 -2.62 1.8·10-61.00 1.00 n/a n/a
ZEB2_HUMAN 2.45 -1.35 3.7·10-31.00 1.00 n/a No Hit
HTF4_HUMAN 2.54 -0.23 0.011.00 1.50 n/a No Hit
MTG8R_HUMAN 2.37 -4.28 0.021.00 1.50 n/a n/a
NFIC_HUMAN 1.83 -1.63 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP obesity with early age of onset (age >2),  parkinsons disease,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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