rs3758076 chr8:85463306 G>C
- Sequence
tgggctgcgggcaggggactgtgg[G/C]gccgttgtctcgttttattccacg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) THP-1 (acute monocytic leukemia) medulloblastoma GM02630 (Fanconi anemi)
- ASB for transcription factors
- HCFC1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 1.89 | -0.25 | 1.50 | n/a | n/a | |||
| STAG1_HUMAN | 0.54 | 0.72 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, adiponectin levels, chronic kidney disease, hdl cholesterol, serum creatinine, triglycerides, waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood