rs3758292 chr9:104091924 C>T
- Sequence
tagctgccagatttctgcttgaaa[C/T]actgcccgctagcgttgaagcttt
- ASB in cell types
- GM02630 (Fanconi anemi) GM12878 (female B-cells lymphoblastoid cell line) Peyer's patch GM18951 (B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN IKZF1_HUMAN CTCF_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.82 | 4.53 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -1.55 | 2.00 | 1.25 | n/a | n/a | |||
| CTCF_HUMAN | 1.13 | 1.29 | 1.08 | 0.06 | Weak Concordant | |||
| SMCA5_HUMAN | -2.33 | 2.58 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Testis, Thyroid